About

Tools used in the project

• Data pre-processing and analysis

  • PyFAST: a library for TIFF image
  • Openslide: a standard lib to open and plot WSI images

• Model Training

  • Pytorch and Lightning for training
  • MLflow for experiment monitoring and model registry
  • Tensorboard for in-run loss and metrics monitoring

• Documentation

  • Mkdocs: to generate static documentation websites from markdown files
  • Mkdocs-Material: a theme for Mkdocs

• Miscellaneous

  • Typer: for a fancy CLI
  • Pydantic: for config validation
  • Github Actions: for CI/CD
  • Pytest: for testing some parts of the project
  • Precommit: for quality checks before committing to the repo